feat: add Alembic database migration system
Implements Alembic for managing token storage database schema versions. Migrations run automatically on startup with full backward compatibility. **Changes:** - Add Alembic dependency (1.14.0+) and SQLAlchemy (auto-installed) - Create migration infrastructure in alembic/ directory - Add initial migration (001) capturing current schema - Modify RefreshTokenStorage.initialize() to run migrations via anyio - Add CLI commands: db upgrade, current, history, downgrade, migrate - Add comprehensive migration documentation **Backward Compatibility:** - Pre-Alembic databases automatically stamped with revision 001 - No schema changes for existing databases - Automatic upgrade on first startup after update **Migration Strategy:** Three scenarios handled: 1. New database → Run migrations from scratch 2. Pre-Alembic database → Stamp with 001 (no changes) 3. Alembic-managed → Upgrade to latest **Architecture:** - Uses anyio.to_thread.run_sync() for structured concurrency - Alembic env.py runs with anyio.run() in worker thread - SQLite-friendly migration patterns documented - No ThreadPoolExecutor needed (anyio handles it) **CLI Usage:** ```bash nextcloud-mcp-server db upgrade # Upgrade to latest nextcloud-mcp-server db current # Show version nextcloud-mcp-server db history # View changelog nextcloud-mcp-server db downgrade # Rollback (with confirmation) nextcloud-mcp-server db migrate "description" # Create migration ``` **Testing:** - All 13 webhook storage tests pass - New/pre-Alembic database scenarios validated - anyio integration tested 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
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@@ -873,6 +873,12 @@ async def unified_search(request: Request) -> JSONResponse:
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result_data["chunk_index"] = result.chunk_index
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result_data["total_chunks"] = result.total_chunks
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# Add chunk offsets for modal navigation
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if result.chunk_start_offset is not None:
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result_data["chunk_start_offset"] = result.chunk_start_offset
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if result.chunk_end_offset is not None:
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result_data["chunk_end_offset"] = result.chunk_end_offset
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formatted_results.append(result_data)
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response_data: dict[str, Any] = {
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